traseR
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see traseR.
GWAS trait-associated SNP enrichment analyses in genomic intervals
Bioconductor version: 3.10
traseR performs GWAS trait-associated SNP enrichment analyses in genomic intervals using different hypothesis testing approaches, also provides various functionalities to explore and visualize the results.
Author: Li Chen, Zhaohui S.Qin
Maintainer: li chen<li.chen at emory.edu>
citation("traseR")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("traseR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("traseR")| Perform GWAS trait-associated SNP enrichment analyses in genomic intervals | R Script | |
| Reference Manual |
Details
| biocViews | Alignment, Coverage, DataImport, Genetics, QualityControl, Sequencing, Software |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL |
| Depends | R (>= 3.2.0), GenomicRanges, IRanges, BSgenome.Hsapiens.UCSC.hg19 |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | traseR_1.16.0.tar.gz |
| Windows Binary | traseR_1.16.0.zip |
| Mac OS X 10.11 (El Capitan) | traseR_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/traseR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/traseR |
| Bioc Package Browser | https://code.bioconductor.org/browse/traseR/ |
| Package Short Url | https://bioconductor.org/packages/traseR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |