target
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see target.
Predict Combined Function of Transcription Factors
Bioconductor version: 3.10
Implement the BETA algorithm for infering direct target genes from DNA-binding and perturbation expression data Wang et al. (2013)
Author: Mahmoud Ahmed [aut, cre]
Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg>
citation("target")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("target")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("target")| Using target to predict combined binding | HTML | R Script |
| Using the target package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Software, StatisticalMethod, Transcription |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6) |
| Imports | BiocGenerics, GenomicRanges, IRanges, matrixStats, methods, stats, graphics, shiny |
| System Requirements | |
| URL | https://github.com/MahShaaban/target |
| Bug Reports | https://github.com/MahShaaban/target/issues |
See More
| Suggests | testthat (>= 2.1.0), knitr, rmarkdown, shinytest, shinyBS, covr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | target_1.0.0.tar.gz |
| Windows Binary | target_1.0.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | target_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/target |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/target |
| Bioc Package Browser | https://code.bioconductor.org/browse/target/ |
| Package Short Url | https://bioconductor.org/packages/target/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |