sojourner
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see sojourner.
sojourner: An R package for statistical analysis of single molecule trajectories
Bioconductor version: 3.10
Single molecule tracking has evolved as a novel new approach complementing genomic sequencing, it reports live biophysical properties of molecules being investigated besides properties relating their coding sequence; here we provided "sojourner" package, to address statistical and bioinformatic needs related to the analysis and comprehension of high throughput single molecule tracking data.
Author: Sheng Liu [aut], Sun Jay Yoo [aut], Xiao Na Tang [aut], Young Soo Sung [aut], Carl Wu [aut], Anand Ranjan [ctb], Vu Nguyen [ctb], Sojourner Developer [cre]
Maintainer: Sojourner Developer <sojourner.developer at outlook.com>
citation("sojourner")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sojourner")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sojourner")| Sojourner: an R package for statistical analysis of single molecule trajectories | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Software, Technology, WorkflowStep |
| Version | 1.0.2 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | ggplot2, dplyr, reshape2, gridExtra, EBImage, MASS, R.matlab, Rcpp, boot, fitdistrplus, mclust, minpack.lm, mixtools, mltools, nls2, plyr, rtiff, sampSurf, scales, shiny, shinyjs, sp, truncnorm, utils, stats, pixmap, rlang, graphics, grDevices, grid, compiler, lattice |
| System Requirements | |
| URL | https://github.com/sheng-liu/sojourner |
| Bug Reports | https://github.com/sheng-liu/sojourner/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | sojourner_1.0.2.tar.gz |
| Windows Binary | sojourner_1.0.2.zip |
| Mac OS X 10.11 (El Capitan) | sojourner_1.0.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/sojourner |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sojourner |
| Bioc Package Browser | https://code.bioconductor.org/browse/sojourner/ |
| Package Short Url | https://bioconductor.org/packages/sojourner/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |