siggenes
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see siggenes.
Multiple Testing using SAM and Efron's Empirical Bayes Approaches
Bioconductor version: 3.10
Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).
Author: Holger Schwender
Maintainer: Holger Schwender <holger.schw at gmx.de>
citation("siggenes")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("siggenes")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("siggenes")| identify.sam.html | HTML | |
| plot.ebam.html | HTML | |
| plot.finda0.html | HTML | |
| plot.sam.html | HTML | |
| print.ebam.html | HTML | |
| print.finda0.html | HTML | |
| print.sam.html | HTML | |
| siggenes Manual | R Script | |
| siggenesRnews.pdf | ||
| summary.ebam.html | HTML | |
| summary.sam.html | HTML | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, ExonArray, GeneExpression, Microarray, MultipleComparison, SNP, Software |
| Version | 1.60.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | LGPL (>= 2) |
| Depends | Biobase, multtest, splines, methods |
| Imports | stats4, grDevices, graphics, stats, scrime (>= 1.2.5) |
| System Requirements | |
| URL |
See More
| Suggests | affy, annotate, genefilter, KernSmooth |
| Linking To | |
| Enhances | |
| Depends On Me | KCsmart |
| Imports Me | coexnet, DAPAR, DeSousa2013, minfi, trio, XDE |
| Suggests Me | logicFS |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | siggenes_1.60.0.tar.gz |
| Windows Binary | siggenes_1.60.0.zip |
| Mac OS X 10.11 (El Capitan) | siggenes_1.60.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/siggenes |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/siggenes |
| Bioc Package Browser | https://code.bioconductor.org/browse/siggenes/ |
| Package Short Url | https://bioconductor.org/packages/siggenes/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |