scTGIF
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see scTGIF.
Cell type annotation for unannotated single-cell RNA-Seq data
Bioconductor version: 3.10
scTGIF connects the cells and the related gene functions without cell type label.
Author: Koki Tsuyuzaki [aut, cre]
Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>
Citation (from within R, enter
citation("scTGIF")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scTGIF")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scTGIF")| scTGIF | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DimensionReduction, GeneExpression, QualityControl, SingleCell, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.6.0) |
| Imports | GSEABase, Biobase, SingleCellExperiment, BiocStyle, plotly, tagcloud, rmarkdown, Rcpp, grDevices, graphics, utils, knitr, S4Vectors, SummarizedExperiment, RColorBrewer, nnTensor, methods, scales, msigdbr |
| System Requirements | |
| URL |
See More
| Suggests | testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | scTGIF_1.0.0.tar.gz |
| Windows Binary | scTGIF_1.0.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | scTGIF_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/scTGIF |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scTGIF |
| Bioc Package Browser | https://code.bioconductor.org/browse/scTGIF/ |
| Package Short Url | https://bioconductor.org/packages/scTGIF/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |