roar
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see roar.
Identify differential APA usage from RNA-seq alignments
Bioconductor version: 3.10
Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.
Author: Elena Grassi
Maintainer: Elena Grassi <grassi.e at gmail.com>
Citation (from within R, enter
citation("roar")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("roar")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("roar")| Identify differential APA usage from RNA-seq alignments | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | HighThroughputSequencing, RNAseq, Sequencing, Software, Transcription |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
| License | GPL-3 |
| Depends | R (>= 3.0.1) |
| Imports | methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment, GenomicAlignments(>= 0.99.4), rtracklayer, GenomeInfoDb |
| System Requirements | |
| URL | https://github.com/vodkatad/roar/ |
See More
| Suggests | RNAseqData.HNRNPC.bam.chr14, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | XBSeq |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | roar_1.22.0.tar.gz |
| Windows Binary | roar_1.22.0.zip |
| Mac OS X 10.11 (El Capitan) | roar_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/roar |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/roar |
| Bioc Package Browser | https://code.bioconductor.org/browse/roar/ |
| Package Short Url | https://bioconductor.org/packages/roar/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |