rTRM

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see rTRM.

Identification of transcriptional regulatory modules from PPI networks

Installation

To install this package, start R (version "3.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rTRM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rTRM")

Introduction to rTRM	PDF	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	GeneRegulation, GraphAndNetwork, Network, Software, Transcription
Version	1.24.0
In Bioconductor since	BioC 2.13 (R-3.0) (10.5 years)
License	GPL-3
Depends	R (>= 2.10), igraph (>= 1.0)
Imports	AnnotationDbi, DBI, RSQLite
System Requirements
URL	https://github.com/ddiez/rTRM
Bug Reports	https://github.com/ddiez/rTRM/issues

See More

Suggests	RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, knitr, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked, org.Hs.eg.db, org.Mm.eg.db, ggplot2
Linking To
Enhances
Depends On Me
Imports Me	rTRMui
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rTRM_1.24.0.tar.gz
Windows Binary	rTRM_1.24.0.zip
Mac OS X 10.11 (El Capitan)	rTRM_1.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rTRM
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rTRM
Bioc Package Browser	https://code.bioconductor.org/browse/rTRM/
Package Short Url	https://bioconductor.org/packages/rTRM/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.10	Source Archive