plyranges
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see plyranges.
A fluent interface for manipulating GenomicRanges
Bioconductor version: 3.10
A dplyr-like interface for interacting with the common Bioconductor classes Ranges and GenomicRanges. By providing a grammatical and consistent way of manipulating these classes their accessiblity for new Bioconductor users is hopefully increased.
Author: Stuart Lee [aut, cre], Michael Lawrence [aut, ctb], Dianne Cook [aut, ctb]
Maintainer: Stuart Lee <lee.s at wehi.edu.au>
citation("plyranges")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("plyranges")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("plyranges")| Introduction | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Coverage, DataRepresentation, Infrastructure, Software, WorkflowStep |
| Version | 1.6.10 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5), BiocGenerics, IRanges(>= 2.12.0), GenomicRanges(>= 1.28.4) |
| Imports | methods, dplyr, rlang (>= 0.2.0), magrittr, tidyselect (>= 1.0.0), rtracklayer, GenomicAlignments, GenomeInfoDb, Rsamtools, S4Vectors(>= 0.23.10), utils |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/sa-lee/plyranges |
See More
| Suggests | knitr, BiocStyle, rmarkdown, testthat (>= 2.1.0), HelloRanges, HelloRangesData, BSgenome.Hsapiens.UCSC.hg19, pasillaBamSubset, covr, ggplot2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | BUSpaRse, methylCC |
| Suggests Me | StructuralVariantAnnotation |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | plyranges_1.6.10.tar.gz |
| Windows Binary | plyranges_1.6.10.zip |
| Mac OS X 10.11 (El Capitan) | plyranges_1.6.10.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/plyranges |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/plyranges |
| Bioc Package Browser | https://code.bioconductor.org/browse/plyranges/ |
| Package Short Url | https://bioconductor.org/packages/plyranges/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |