plier
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see plier.
Implements the Affymetrix PLIER algorithm
Bioconductor version: 3.10
The PLIER (Probe Logarithmic Error Intensity Estimate) method produces an improved signal by accounting for experimentally observed patterns in probe behavior and handling error at the appropriately at low and high signal values.
Author: Affymetrix Inc., Crispin J Miller, PICR
Maintainer: Crispin Miller <cmiller at picr.man.ac.uk>
Citation (from within R, enter
citation("plier")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("plier")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| README | Text |
Details
| biocViews | Software |
| Version | 1.56.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.0), methods |
| Imports | affy, Biobase, methods |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | piano |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | plier_1.56.0.tar.gz |
| Windows Binary | plier_1.56.0.zip |
| Mac OS X 10.11 (El Capitan) | plier_1.56.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/plier |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/plier |
| Bioc Package Browser | https://code.bioconductor.org/browse/plier/ |
| Package Short Url | https://bioconductor.org/packages/plier/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |