pRolocGUI
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see pRolocGUI.
Interactive visualisation of spatial proteomics data
Bioconductor version: 3.10
The package pRolocGUI comprises functions to interactively visualise organelle (spatial) proteomics data on the basis of pRoloc, pRolocdata and shiny.
Author: Lisa M Breckels, Thomas Naake and Laurent Gatto
Maintainer: Laurent Gatto <lg390 at cam.ac.uk>, Lisa M Breckels <lms79 at cam.ac.uk>
citation("pRolocGUI")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pRolocGUI")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pRolocGUI")| pRolocGUI - Interactive visualisation of spatial proteomics data | HTML | R Script |
| Reference Manual | ||
| pRoloc, pRolocdata and pRolocGUI | Video |
Details
| biocViews | GUI, Proteomics, Software, Visualization |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | GPL-2 |
| Depends | methods, R (>= 3.1.0), pRoloc(>= 1.11.1), Biobase, MSnbase(>= 2.1.11) |
| Imports | shiny (>= 0.9.1), scales, dplyr, DT (>= 0.1.40), graphics, utils, ggplot2 |
| System Requirements | |
| URL | http://ComputationalProteomicsUnit.github.io/pRolocGUI/ |
| Bug Reports | https://github.com/ComputationalProteomicsUnit/pRolocGUI/issues |
See More
| Suggests | pRolocdata, knitr, BiocStyle(>= 2.5.19), rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pRolocGUI_1.20.0.tar.gz |
| Windows Binary | pRolocGUI_1.20.0.zip |
| Mac OS X 10.11 (El Capitan) | pRolocGUI_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/pRolocGUI |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pRolocGUI |
| Bioc Package Browser | https://code.bioconductor.org/browse/pRolocGUI/ |
| Package Short Url | https://bioconductor.org/packages/pRolocGUI/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |