ncGTW
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see ncGTW.
Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection
Bioconductor version: 3.10
The purpose of ncGTW is to help XCMS for LC-MS data alignment. Currently, ncGTW can detect the misaligned feature groups by XCMS, and the user can choose to realign these feature groups by ncGTW or not.
Author: Chiung-Ting Wu <ctwu at vt.edu>
Maintainer: Chiung-Ting Wu <ctwu at vt.edu>
citation("ncGTW")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ncGTW")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ncGTW")| ncGTW User Manual | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Alignment, MassSpectrometry, Metabolomics, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | GPL-2 |
| Depends | methods, BiocParallel, xcms |
| Imports | Rcpp, grDevices, graphics, stats |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/ChiungTingWu/ncGTW/issues |
See More
| Suggests | BiocStyle, knitr, testthat, rmarkdown |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ncGTW_1.0.0.tar.gz |
| Windows Binary | ncGTW_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | ncGTW_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ncGTW |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ncGTW |
| Bioc Package Browser | https://code.bioconductor.org/browse/ncGTW/ |
| Package Short Url | https://bioconductor.org/packages/ncGTW/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |