matter

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see matter.

A framework for rapid prototyping with file-based data structures

Bioconductor version: 3.10

Memory-efficient reading, writing, and manipulation of structured binary data as file-based vectors, matrices, arrays, lists, and data frames.

Author: Kylie A. Bemis <k.bemis at northeastern.edu>

Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>

Citation (from within R, enter citation("matter")):

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("matter")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("matter")

matter: Rapid prototyping with data on disk	PDF	R Script
matter: Supplementary 1 - Simulations and comparative benchmarks	PDF	R Script
matter: Supplementary 2 - 3D mass spectrometry imaging case study	PDF	R Script
Reference Manual	PDF
NEWS	Text

biocViews	DataRepresentation, Infrastructure, Software
Version	1.12.0
In Bioconductor since	BioC 3.4 (R-3.3) (7.5 years)
License	Artistic-2.0
Depends	R (>= 3.5), BiocParallel, methods, stats, biglm
Imports	BiocGenerics, ProtGenerics, digest, irlba, utils
System Requirements
URL	https://github.com/kuwisdelu/matter

Follow Installation instructions to use this package in your R session.

Source Package	matter_1.12.0.tar.gz
Windows Binary	matter_1.12.0.zip
Mac OS X 10.11 (El Capitan)	matter_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/matter
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/matter
Bioc Package Browser	https://code.bioconductor.org/browse/matter/
Package Short Url	https://bioconductor.org/packages/matter/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.10	Source Archive