lmdme
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see lmdme.
Linear Model decomposition for Designed Multivariate Experiments
Bioconductor version: 3.10
linear ANOVA decomposition of Multivariate Designed Experiments implementation based on limma lmFit. Features: i)Flexible formula type interface, ii) Fast limma based implementation, iii) p-values for each estimated coefficient levels in each factor, iv) F values for factor effects and v) plotting functions for PCA and PLS.
Author: Cristobal Fresno and Elmer A. Fernandez
Maintainer: Cristobal Fresno <cfresno at bdmg.com.ar>
citation("lmdme")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("lmdme")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("lmdme")| lmdme: linear model framework for PCA/PLS analysis of ANOVA decomposition on Designed Multivariate Experiments in R | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Cancer, DifferentialExpression, ExperimentData, Microarray, OneChannel, Software, TwoChannel, Visualization |
| Version | 1.28.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
| License | GPL (>=2) |
| Depends | R (>= 2.14.1), pls, stemHypoxia |
| Imports | stats, methods, limma |
| System Requirements | |
| URL | http://www.bdmg.com.ar/?page_id=38 |
See More
| Suggests | |
| Linking To | |
| Enhances | parallel |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | lmdme_1.28.0.tar.gz |
| Windows Binary | lmdme_1.28.0.zip |
| Mac OS X 10.11 (El Capitan) | lmdme_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/lmdme |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/lmdme |
| Bioc Package Browser | https://code.bioconductor.org/browse/lmdme/ |
| Package Short Url | https://bioconductor.org/packages/lmdme/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |