gQTLBase
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see gQTLBase.
gQTLBase: infrastructure for eQTL, mQTL and similar studies
Bioconductor version: 3.10
Infrastructure for eQTL, mQTL and similar studies.
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("gQTLBase")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gQTLBase")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gQTLBase")| gQTLBase infrastructure for eQTL archives | HTML | R Script |
| Reference Manual |
Details
| biocViews | Software |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | GenomicRanges, methods, BatchJobs, BBmisc, S4Vectors, BiocGenerics, foreach, doParallel, bit, ff, rtracklayer, ffbase, GenomicFiles, SummarizedExperiment |
| System Requirements | |
| URL |
See More
| Suggests | geuvStore2, knitr, rmarkdown, BiocStyle, RUnit, GGtools, Homo.sapiens, IRanges, erma, GenomeInfoDb, gwascat, geuvPack |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | geuvStore2, gQTLstats, yriMulti |
| Suggests Me | parglms |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gQTLBase_1.18.0.tar.gz |
| Windows Binary | gQTLBase_1.18.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | gQTLBase_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gQTLBase |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gQTLBase |
| Bioc Package Browser | https://code.bioconductor.org/browse/gQTLBase/ |
| Package Short Url | https://bioconductor.org/packages/gQTLBase/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |