erccdashboard
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see erccdashboard.
Assess Differential Gene Expression Experiments with ERCC Controls
Bioconductor version: 3.10
Technical performance metrics for differential gene expression experiments using External RNA Controls Consortium (ERCC) spike-in ratio mixtures.
Author: Sarah Munro, Steve Lund
Maintainer: Sarah Munro <sarah.munro at gmail.com>
Citation (from within R, enter
citation("erccdashboard")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("erccdashboard")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("erccdashboard")| erccdashboard examples | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AlternativeSplicing, BatchEffect, DifferentialExpression, DifferentialSplicing, GeneExpression, Genetics, ImmunoOncology, Microarray, MultipleComparison, QualityControl, RNASeq, Software, Transcription, mRNAMicroarray |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | GPL (>=2) |
| Depends | R (>= 3.2), ggplot2 (>= 2.1.0), gridExtra (>= 2.0.0) |
| Imports | edgeR, gplots, grid, gtools, limma, locfit, MASS, plyr, qvalue, reshape2, ROCR, scales, stringr |
| System Requirements | |
| URL | https://github.com/munrosa/erccdashboard http://tinyurl.com/erccsrm |
| Bug Reports | https://github.com/munrosa/erccdashboard/issues |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | erccdashboard_1.20.0.tar.gz |
| Windows Binary | erccdashboard_1.20.0.zip |
| Mac OS X 10.11 (El Capitan) | erccdashboard_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/erccdashboard |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/erccdashboard |
| Bioc Package Browser | https://code.bioconductor.org/browse/erccdashboard/ |
| Package Short Url | https://bioconductor.org/packages/erccdashboard/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |