condcomp

DOI: 10.18129/B9.bioc.condcomp    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see condcomp.

Condition Comparison in scRNA-seq Data

Bioconductor version: Release (3.10)

For a given clustered data, which can also be split into two conditions, this package provides a way to perform a condition comparison on said clustered data. The comparison is performed on each cluster. Several statistics are used and, when analysed in conjunction, they might give some insight regarding the heterogeneity of some of the clusters.

Author: Diogo P. P. Branco <diogo.pp.branco at gmail.com>

Maintainer: <>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("condcomp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Clustering, ImmunoOncology, SingleCell, Software, Visualization
Version	1.4.0
In Bioconductor since	BioC 3.8 (R-3.5) (1.5 years)
License	GPL (>=2) | file LICENSE
Depends	R (>= 3.5.0)
Imports	cluster, ggplot2, ggrepel, outliers
LinkingTo
Suggests	testthat, knitr, rmarkdown, BiocStyle, Matrix, Seurat, monocle, HSMMSingleCell
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/condcomp
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/condcomp
Package Short Url	https://bioconductor.org/packages/condcomp/
Package Downloads Report	Download Stats