cobindR
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see cobindR.
Finding Co-occuring motifs of transcription factor binding sites
Bioconductor version: 3.10
Finding and analysing co-occuring motifs of transcription factor binding sites in groups of genes
Author: Manuela Benary, Stefan Kroeger, Yuehien Lee, Robert Lehmann
Maintainer: Manuela Benary <manuela.benary at cms.hu-berlin.de>
citation("cobindR")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cobindR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cobindR")| Using cobindR | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBiology, ChIPSeq, MultipleComparison, SequenceMatching, Software |
| Version | 1.24.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | methods, seqinr, yaml, rtfbs, gplots, mclust, gmp, BiocGenerics(>= 0.13.8), IRanges, Biostrings, BSgenome, biomaRt |
| System Requirements | |
| URL |
See More
| Suggests | RUnit |
| Linking To | |
| Enhances | rGADEM, seqLogo, genoPlotR, parallel, VennDiagram, RColorBrewer, vcd, MotifDb, snowfall |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | cobindR_1.24.0.tar.gz |
| Windows Binary | cobindR_1.24.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | cobindR_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/cobindR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cobindR |
| Bioc Package Browser | https://code.bioconductor.org/browse/cobindR/ |
| Package Short Url | https://bioconductor.org/packages/cobindR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |