clippda
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see clippda.
A package for the clinical proteomic profiling data analysis
Bioconductor version: 3.10
Methods for the nalysis of data from clinical proteomic profiling studies. The focus is on the studies of human subjects, which are often observational case-control by design and have technical replicates. A method for sample size determination for planning these studies is proposed. It incorporates routines for adjusting for the expected heterogeneities and imbalances in the data and the within-sample replicate correlations.
Author: Stephen Nyangoma
Maintainer: Stephen Nyangoma <s.o.nyangoma at bham.ac.uk>
citation("clippda")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("clippda")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("clippda")| Sample Size Calculation | R Script | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, MultipleComparison, OneChannel, Preprocessing, Proteomics, Software |
| Version | 1.36.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) (14.5 years) |
| License | GPL (>=2) |
| Depends | R (>= 2.13.1), limma, statmod, rgl, lattice, scatterplot3d, graphics, grDevices, stats, utils, Biobase, tools, methods |
| Imports | |
| System Requirements | |
| URL | http://www.cancerstudies.bham.ac.uk/crctu/CLIPPDA.shtml |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | clippda_1.36.0.tar.gz |
| Windows Binary | clippda_1.36.0.zip |
| Mac OS X 10.11 (El Capitan) | clippda_1.36.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/clippda |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/clippda |
| Bioc Package Browser | https://code.bioconductor.org/browse/clippda/ |
| Package Short Url | https://bioconductor.org/packages/clippda/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |