chromDraw
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see chromDraw.
chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.
Bioconductor version: 3.10
ChromDraw is a R package for drawing the schemes of karyotype(s) in the linear and circular fashion. It is possible to visualized cytogenetic marsk on the chromosomes. This tool has own input data format. Input data can be imported from the GenomicRanges data structure. This package can visualized the data in the BED file format. Here is requirement on to the first nine fields of the BED format. Output files format are *.eps and *.svg.
Author: Jan Janecka, Ing., Mgr. CEITEC Masaryk University
Maintainer: Jan Janecka <jan.janecka at ceitec.muni.cz>
citation("chromDraw")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("chromDraw")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chromDraw")| chromDraw | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Software |
| Version | 2.16.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | GPL-3 |
| Depends | R (>= 3.0.0) |
| Imports | Rcpp (>= 0.11.1), GenomicRanges(>= 1.17.46) |
| System Requirements | Rtools (>= 3.1) |
| URL | www.plantcytogenomics.org/chromDraw |
See More
| Suggests | |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | chromDraw_2.16.0.tar.gz |
| Windows Binary | chromDraw_2.16.0.zip |
| Mac OS X 10.11 (El Capitan) | chromDraw_2.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/chromDraw |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/chromDraw |
| Bioc Package Browser | https://code.bioconductor.org/browse/chromDraw/ |
| Package Short Url | https://bioconductor.org/packages/chromDraw/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |