TarSeqQC
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see TarSeqQC.
TARgeted SEQuencing Experiment Quality Control
Bioconductor version: 3.10
The package allows the representation of targeted experiment in R. This is based on current packages and incorporates functions to do a quality control over this kind of experiments and a fast exploration of the sequenced regions. An xlsx file is generated as output.
Author: Gabriela A. Merino, Cristobal Fresno, Yanina Murua, Andrea S. Llera and Elmer A. Fernandez
Maintainer: Gabriela Merino <merino.gabriela33 at gmail.com>
citation("TarSeqQC")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TarSeqQC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TarSeqQC")| TarSeqQC: Targeted Sequencing Experiment Quality Control | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Alignment, Coverage, DataImport, QualityControl, Sequencing, Software, TargetedResequencing, Visualization |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL (>=2) |
| Depends | R (>= 3.5.1), methods, GenomicRanges, Rsamtools(>= 1.9.2), ggplot2, plyr, openxlsx |
| Imports | grDevices, stats, utils, S4Vectors, IRanges, BiocGenerics, reshape2, GenomeInfoDb, BiocParallel, Biostrings, cowplot, graphics, GenomicAlignments, Hmisc |
| System Requirements | |
| URL | http://www.bdmg.com.ar |
See More
| Suggests | BiocManager, RUnit |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TarSeqQC_1.16.0.tar.gz |
| Windows Binary | TarSeqQC_1.16.0.zip |
| Mac OS X 10.11 (El Capitan) | TarSeqQC_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TarSeqQC |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TarSeqQC |
| Bioc Package Browser | https://code.bioconductor.org/browse/TarSeqQC/ |
| Package Short Url | https://bioconductor.org/packages/TarSeqQC/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |