TFARM
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see TFARM.
Transcription Factors Association Rules Miner
Bioconductor version: 3.10
It searches for relevant associations of transcription factors with a transcription factor target, in specific genomic regions. It also allows to evaluate the Importance Index distribution of transcription factors (and combinations of transcription factors) in association rules.
Author: Liuba Nausicaa Martino, Alice Parodi, Gaia Ceddia, Piercesare Secchi, Stefano Campaner, Marco Masseroli
Maintainer: Liuba Nausicaa Martino <liuban.martino at gmail.com>
citation("TFARM")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TFARM")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TFARM")| Transcription Factor Association Rule Miner | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BiologicalQuestion, Infrastructure, Software, StatisticalMethod, Transcription |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4) |
| Imports | arules, fields, GenomicRanges, graphics, stringr, methods, stats, gplots |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, plyr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TFARM_1.8.0.tar.gz |
| Windows Binary | TFARM_1.8.0.zip |
| Mac OS X 10.11 (El Capitan) | TFARM_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TFARM |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TFARM |
| Bioc Package Browser | https://code.bioconductor.org/browse/TFARM/ |
| Package Short Url | https://bioconductor.org/packages/TFARM/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |