SAGx
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SAGx.
Statistical Analysis of the GeneChip
Bioconductor version: 3.10
A package for retrieval, preparation and analysis of data from the Affymetrix GeneChip. In particular the issue of identifying differentially expressed genes is addressed.
Author: Per Broberg
Maintainer: Per Broberg, <pi.broberg at gmail.com>
citation("SAGx")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SAGx")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SAGx")| samroc - example | R Script | |
| Reference Manual |
Details
| biocViews | Clustering, DataImport, DifferentialExpression, GeneExpression, GeneSetEnrichment, KEGG, Microarray, MultipleComparison, OneChannel, Pathways, Preprocessing, Regression, Software |
| Version | 1.60.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) (17.5 years) |
| License | GPL-3 |
| Depends | R (>= 2.5.0), stats, multtest, methods |
| Imports | Biobase, stats4 |
| System Requirements | |
| URL | http://home.swipnet.se/pibroberg/expression_hemsida1.html |
See More
| Suggests | KEGG.db, hu6800.db, MASS |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SAGx_1.60.0.tar.gz |
| Windows Binary | SAGx_1.60.0.zip |
| Mac OS X 10.11 (El Capitan) | SAGx_1.60.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SAGx |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SAGx |
| Bioc Package Browser | https://code.bioconductor.org/browse/SAGx/ |
| Package Short Url | https://bioconductor.org/packages/SAGx/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |