RpsiXML
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RpsiXML.
R interface to PSI-MI 2.5 files
Bioconductor version: 3.10
Queries, data structure and interface to visualization of interaction datasets. This package inplements the PSI-MI 2.5 standard and supports up to now 8 databases. Further databases supporting PSI-MI 2.5 standard will be added continuously.
Author: Jitao David Zhang, Stefan Wiemann, Marc Carlson, with contributions from Tony Chiang
Maintainer: Jitao David Zhang <jitao_david.zhang at roche.com>
citation("RpsiXML")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RpsiXML")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RpsiXML")| Application Examples of RpsiXML package | R Script | |
| Reading PSI-25 XML files | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Proteomics, Software |
| Version | 2.28.0 |
| In Bioconductor since | BioC 2.3 (R-2.8) (15.5 years) |
| License | LGPL-3 |
| Depends | methods, annotate(>= 1.21.0), graph(>= 1.21.0), Biobase, RBGL(>= 1.17.0), XML (>= 2.4.0), hypergraph(>= 1.15.2), AnnotationDbi |
| Imports | |
| System Requirements | |
| URL | http://www.bioconductor.org |
See More
| Suggests | org.Hs.eg.db, org.Mm.eg.db, org.Dm.eg.db, org.Rn.eg.db, org.Sc.sgd.db, hom.Hs.inp.db, hom.Mm.inp.db, hom.Dm.inp.db, hom.Rn.inp.db, hom.Sc.inp.db, Rgraphviz, ppiStats, ScISI |
| Linking To | |
| Enhances | |
| Depends On Me | ScISI |
| Imports Me | ScISI |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RpsiXML_2.28.0.tar.gz |
| Windows Binary | RpsiXML_2.28.0.zip |
| Mac OS X 10.11 (El Capitan) | RpsiXML_2.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RpsiXML |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RpsiXML |
| Bioc Package Browser | https://code.bioconductor.org/browse/RpsiXML/ |
| Package Short Url | https://bioconductor.org/packages/RpsiXML/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |