Rhtslib
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see Rhtslib.
HTSlib high-throughput sequencing library as an R package
Bioconductor version: 3.10
This package provides version 1.7 of the 'HTSlib' C library for high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette, vignette(package="Rhtslib", "Rhtslib").
Author: Nathaniel Hayden [led, aut], Martin Morgan [aut], Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("Rhtslib")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rhtslib")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rhtslib")| Motivation and use of Rhtslib | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Sequencing, Software |
| Version | 1.18.1 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | LGPL (>= 2) |
| Depends | |
| Imports | zlibbioc |
| System Requirements | libbz2 & liblzma & libcurl (with header files), GNU make |
| URL | https://github.com/Bioconductor/Rhtslib http://www.htslib.org/ |
| Bug Reports | https://github.com/Bioconductor/Rhtslib |
See More
| Suggests | BiocStyle, knitr |
| Linking To | zlibbioc |
| Enhances | |
| Depends On Me | deepSNV |
| Imports Me | deepSNV, diffHic, scPipe |
| Suggests Me | |
| Links To Me | ArrayExpressHTS, bamsignals, BitSeq, csaw, deepSNV, DiffBind, diffHic, h5vc, methylKit, podkat, qrqc, QuasR, Rsamtools, scPipe, seqbias, TransView, VariantAnnotation |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Rhtslib_1.18.1.tar.gz |
| Windows Binary | Rhtslib_1.18.1.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | Rhtslib_1.18.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Rhtslib |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rhtslib |
| Bioc Package Browser | https://code.bioconductor.org/browse/Rhtslib/ |
| Package Short Url | https://bioconductor.org/packages/Rhtslib/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |