RcwlPipelines
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see RcwlPipelines.
Bioinformatics pipelines based on Rcwl
Bioconductor version: 3.10
A collection of Bioinformatics tools and pipelines based on R and the Common Workflow Language.
Author: Qiang Hu [aut, cre], Shuang Gao [aut]
Maintainer: Qiang Hu <qiang.hu at roswellpark.org>
Citation (from within R, enter
citation("RcwlPipelines")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RcwlPipelines")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RcwlPipelines")| Rcwl Pipelines | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Alignment, DNASeq, DataImport, ImmunoOncology, Preprocessing, QualityControl, RNASeq, Software, WorkflowStep |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | GPL-2 |
| Depends | R (>= 3.6), Rcwl, BiocFileCache |
| Imports | dplyr, rappdirs, jsonlite, methods, utils, tximport |
| System Requirements | nodejs |
| URL |
See More
| Suggests | testthat, knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RcwlPipelines_1.2.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | RcwlPipelines_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RcwlPipelines |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RcwlPipelines |
| Bioc Package Browser | https://code.bioconductor.org/browse/RcwlPipelines/ |
| Package Short Url | https://bioconductor.org/packages/RcwlPipelines/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |