RNAmodR.AlkAnilineSeq
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see RNAmodR.AlkAnilineSeq.
Detection of m7G, m3C and D modification by AlkAnilineSeq
Bioconductor version: 3.10
RNAmodR.AlkAnilineSeq implements the detection of m7G, m3C and D modifications on RNA from experimental data generated with the AlkAnilineSeq protocol. The package builds on the core functionality of the RNAmodR package to detect specific patterns of the modifications in high throughput sequencing data.
Author: Felix G.M. Ernst [aut, cre] 
, Denis L.J. Lafontaine [ctb, fnd]
Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>
citation("RNAmodR.AlkAnilineSeq")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RNAmodR.AlkAnilineSeq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RNAmodR.AlkAnilineSeq")| RNAmodR.AlkAnilineSeq | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Sequencing, Software, Visualization, WorkflowStep |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.6), RNAmodR |
| Imports | methods, S4Vectors, IRanges, BiocGenerics, GenomicRanges, Gviz |
| System Requirements | |
| URL | https://github.com/FelixErnst/RNAmodR.AlkAnilineSeq |
| Bug Reports | https://github.com/FelixErnst/RNAmodR.AlkAnilineSeq/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat, rtracklayer, Biostrings, RNAmodR.Data |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | RNAmodR.ML |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RNAmodR.AlkAnilineSeq_1.0.0.tar.gz |
| Windows Binary | RNAmodR.AlkAnilineSeq_1.0.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | RNAmodR.AlkAnilineSeq_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RNAmodR.AlkAnilineSeq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RNAmodR.AlkAnilineSeq |
| Bioc Package Browser | https://code.bioconductor.org/browse/RNAmodR.AlkAnilineSeq/ |
| Package Short Url | https://bioconductor.org/packages/RNAmodR.AlkAnilineSeq/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |