Qtlizer
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see Qtlizer.
Qtlizer: comprehensive QTL annotation of GWAS results
Bioconductor version: 3.10
This R package provides access to the Qtlizer web server. Qtlizer annotates lists of common small variants (mainly SNPs) and genes in humans with associated changes in gene expression using the most comprehensive database of published quantitative trait loci (QTLs).
Author: Matthias Munz [aut, cre], Julia Remes [aut]
Maintainer: Matthias Munz <m.munz at uni-luebeck.de>
citation("Qtlizer")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Qtlizer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Qtlizer")| Qtlizer | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Genetics, GenomeWideAssociation, LinkageDisequilibrium, SNP, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6.0) |
| Imports | httr, curl, GenomicRanges, stringi |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/matmu/Qtlizer/issues |
See More
| Suggests | BiocStyle, testthat, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Qtlizer_1.0.0.tar.gz |
| Windows Binary | Qtlizer_1.0.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | Qtlizer_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Qtlizer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Qtlizer |
| Bioc Package Browser | https://code.bioconductor.org/browse/Qtlizer/ |
| Package Short Url | https://bioconductor.org/packages/Qtlizer/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |