MeSHDbi

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see MeSHDbi.

DBI to construct MeSH-related package from sqlite file

Bioconductor version: 3.10

The package is unified implementation of MeSH.db, MeSH.AOR.db, and MeSH.PCR.db and also is interface to construct Gene-MeSH package (MeSH.XXX.eg.db). loadMeSHDbiPkg import sqlite file and generate MeSH.XXX.eg.db.

Author: Koki Tsuyuzaki

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Citation (from within R, enter citation("MeSHDbi")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MeSHDbi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MeSHDbi")

MeSH.db	PDF
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Annotation, AnnotationData, Infrastructure, Software
Version	1.22.0
In Bioconductor since	BioC 2.14 (R-3.1) (10 years)
License	Artistic-2.0
Depends	R (>= 3.0.1), BiocGenerics(>= 0.15.10)
Imports	methods, AnnotationDbi(>= 1.31.19), RSQLite, Biobase
System Requirements
URL

See More

Suggests	RUnit
Linking To
Enhances
Depends On Me	MeSH.Aca.eg.db, MeSH.Aga.PEST.eg.db, MeSH.Ame.eg.db, MeSH.Aml.eg.db, MeSH.Ana.eg.db, MeSH.Ani.FGSC.eg.db, MeSH.AOR.db, MeSH.Ath.eg.db, MeSH.Bfl.eg.db, MeSH.Bsu.168.eg.db, MeSH.Bta.eg.db, MeSH.Cal.SC5314.eg.db, MeSH.Cbr.eg.db, MeSH.Cel.eg.db, MeSH.Cfa.eg.db, MeSH.Cin.eg.db, MeSH.Cja.eg.db, MeSH.Cpo.eg.db, MeSH.Cre.eg.db, MeSH.Dan.eg.db, MeSH.db, MeSH.Dda.3937.eg.db, MeSH.Ddi.AX4.eg.db, MeSH.Der.eg.db, MeSH.Dgr.eg.db, MeSH.Dme.eg.db, MeSH.Dmo.eg.db, MeSH.Dpe.eg.db, MeSH.Dre.eg.db, MeSH.Dse.eg.db, MeSH.Dsi.eg.db, MeSH.Dvi.eg.db, MeSH.Dya.eg.db, MeSH.Eco.55989.eg.db, MeSH.Eco.ED1a.eg.db, MeSH.Eco.IAI39.eg.db, MeSH.Eco.K12.MG1655.eg.db, MeSH.Eco.O157.H7.Sakai.eg.db, MeSH.Eco.UMN026.eg.db, MeSH.Eqc.eg.db, MeSH.Gga.eg.db, MeSH.Gma.eg.db, MeSH.Hsa.eg.db, MeSH.Laf.eg.db, MeSH.Lma.eg.db, MeSH.Mdo.eg.db, MeSH.Mes.eg.db, MeSH.Mga.eg.db, MeSH.Miy.eg.db, MeSH.Mml.eg.db, MeSH.Mmu.eg.db, MeSH.Mtr.eg.db, MeSH.Nle.eg.db, MeSH.Oan.eg.db, MeSH.Ocu.eg.db, MeSH.Oni.eg.db, MeSH.Osa.eg.db, MeSH.Pab.eg.db, MeSH.Pae.PAO1.eg.db, MeSH.PCR.db, MeSH.Pfa.3D7.eg.db, MeSH.Pto.eg.db, MeSH.Ptr.eg.db, MeSH.Rno.eg.db, MeSH.Sce.S288c.eg.db, MeSH.Sco.A32.eg.db, MeSH.Sil.eg.db, MeSH.Spu.eg.db, MeSH.Ssc.eg.db, MeSH.Syn.eg.db, MeSH.Tbr.9274.eg.db, MeSH.Tgo.ME49.eg.db, MeSH.Tgu.eg.db, MeSH.Vvi.eg.db, MeSH.Xla.eg.db, MeSH.Xtr.eg.db, MeSH.Zma.eg.db
Imports Me	meshr, scTensor
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MeSHDbi_1.22.0.tar.gz
Windows Binary	MeSHDbi_1.22.0.zip
Mac OS X 10.11 (El Capitan)	MeSHDbi_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MeSHDbi
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MeSHDbi
Bioc Package Browser	https://code.bioconductor.org/browse/MeSHDbi/
Package Short Url	https://bioconductor.org/packages/MeSHDbi/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.10	Source Archive