MBttest
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see MBttest.
Multiple Beta t-Tests
Bioconductor version: 3.10
MBttest method was developed from beta t-test method of Baggerly et al(2003). Compared to baySeq (Hard castle and Kelly 2010), DESeq (Anders and Huber 2010) and exact test (Robinson and Smyth 2007, 2008) and the GLM of McCarthy et al(2012), MBttest is of high work efficiency,that is, it has high power, high conservativeness of FDR estimation and high stability. MBttest is suit- able to transcriptomic data, tag data, SAGE data (count data) from small samples or a few replicate libraries. It can be used to identify genes, mRNA isoforms or tags differentially expressed between two conditions.
Author: Yuan-De Tan
Maintainer: Yuan-De Tan <tanyuande at gmail.com>
citation("MBttest")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MBttest")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MBttest")| Analysing RNA-Seq count data with the "MBttest" package | R Script | |
| MBttest-manual.pdf | ||
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, MultipleComparison, SAGE, Sequencing, Software, Transcription |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | GPL-3 |
| Depends | R (>= 3.3.0), stats, gplots, gtools, graphics, base, utils, grDevices |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MBttest_1.14.0.tar.gz |
| Windows Binary | MBttest_1.14.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | MBttest_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MBttest |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MBttest |
| Bioc Package Browser | https://code.bioconductor.org/browse/MBttest/ |
| Package Short Url | https://bioconductor.org/packages/MBttest/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |