KEGGprofile
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see KEGGprofile.
An annotation and visualization package for multi-types and multi-groups expression data in KEGG pathway
Bioconductor version: 3.10
KEGGprofile is an annotation and visualization tool which integrated the expression profiles and the function annotation in KEGG pathway maps. The multi-types and multi-groups expression data can be visualized in one pathway map. KEGGprofile facilitated more detailed analysis about the specific function changes inner pathway or temporal correlations in different genes and samples.
Author: Shilin Zhao, Yan Guo, Yu Shyr
Maintainer: Shilin Zhao <shilin.zhao at vanderbilt.edu>
citation("KEGGprofile")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("KEGGprofile")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("KEGGprofile")| KEGGprofile: Application Examples | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | KEGG, Pathways, Software |
| Version | 1.28.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
| License | GPL (>= 2) |
| Depends | |
| Imports | AnnotationDbi, png, TeachingDemos, XML, KEGG.db, KEGGREST, biomaRt, RCurl, ggplot2, reshape2 |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | IntramiRExploreR |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | KEGGprofile_1.28.0.tar.gz |
| Windows Binary | KEGGprofile_1.28.0.zip |
| Mac OS X 10.11 (El Capitan) | KEGGprofile_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/KEGGprofile |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/KEGGprofile |
| Bioc Package Browser | https://code.bioconductor.org/browse/KEGGprofile/ |
| Package Short Url | https://bioconductor.org/packages/KEGGprofile/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |