GenomicTuples
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see GenomicTuples.
Representation and Manipulation of Genomic Tuples
Bioconductor version: 3.10
GenomicTuples defines general purpose containers for storing genomic tuples. It aims to provide functionality for tuples of genomic co-ordinates that are analogous to those available for genomic ranges in the GenomicRanges Bioconductor package.
Author: Peter Hickey <peter.hickey at gmail.com>, with contributions from Marcin Cieslik and Hervé Pagès.
Maintainer: Peter Hickey <peter.hickey at gmail.com>
citation("GenomicTuples")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GenomicTuples")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomicTuples")| GenomicTuplesIntroduction | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation, Infrastructure, Sequencing, Software |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.3.0), GenomicRanges(>= 1.37.4), GenomeInfoDb(>= 1.15.2), S4Vectors(>= 0.17.25) |
| Imports | methods, BiocGenerics(>= 0.21.2), Rcpp (>= 0.11.2), IRanges(>= 2.19.13), data.table, stats4 |
| System Requirements | |
| URL | www.github.com/PeteHaitch/GenomicTuples |
| Bug Reports | https://github.com/PeteHaitch/GenomicTuples/issues |
See More
| Suggests | testthat, knitr, BiocStyle, rmarkdown |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GenomicTuples_1.20.0.tar.gz |
| Windows Binary | GenomicTuples_1.20.0.zip |
| Mac OS X 10.11 (El Capitan) | GenomicTuples_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GenomicTuples |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GenomicTuples |
| Bioc Package Browser | https://code.bioconductor.org/browse/GenomicTuples/ |
| Package Short Url | https://bioconductor.org/packages/GenomicTuples/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |