GSReg
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see GSReg.
Gene Set Regulation (GS-Reg)
Bioconductor version: 3.10
A package for gene set analysis based on the variability of expressions as well as a method to detect Alternative Splicing Events . It implements DIfferential RAnk Conservation (DIRAC) and gene set Expression Variation Analysis (EVA) methods. For detecting Differentially Spliced genes, it provides an implementation of the Spliced-EVA (SEVA).
Author: Bahman Afsari <bahman at jhu.edu>, Elana J. Fertig <ejfertig at jhmi.edu>
Maintainer: Bahman Afsari <bahman at jhu.edu>, Elana J. Fertig <ejfertig at jhmi.edu>
citation("GSReg")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GSReg")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSReg")| Working with the GSReg package | R Script | |
| Reference Manual |
Details
| biocViews | AlternativeSplicing, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneticVariability, Pathways, Software |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.13.1), Homo.sapiens, org.Hs.eg.db, GenomicFeatures, AnnotationDbi |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | GenomicRanges, GSBenchMark |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GSReg_1.20.0.tar.gz |
| Windows Binary | GSReg_1.20.0.zip |
| Mac OS X 10.11 (El Capitan) | GSReg_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GSReg |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GSReg |
| Bioc Package Browser | https://code.bioconductor.org/browse/GSReg/ |
| Package Short Url | https://bioconductor.org/packages/GSReg/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |