GOpro
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see GOpro.
Find the most characteristic gene ontology terms for groups of human genes
Bioconductor version: 3.10
Find the most characteristic gene ontology terms for groups of human genes. This package was created as a part of the thesis which was developed under the auspices of MI^2 Group (http://mi2.mini.pw.edu.pl/, https://github.com/geneticsMiNIng).
Author: Lidia Chrabaszcz
Maintainer: Lidia Chrabaszcz <chrabaszcz.lidia at gmail.com>
citation("GOpro")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GOpro")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GOpro")| GOpro: Determine groups of genes and find their characteristic GO term | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, Clustering, GO, GeneExpression, GeneSetEnrichment, MultipleComparison, Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.4) |
| Imports | AnnotationDbi, dendextend, doParallel, foreach, parallel, org.Hs.eg.db, GO.db, Rcpp, stats, graphics, MultiAssayExperiment, IRanges, S4Vectors |
| System Requirements | |
| URL | https://github.com/mi2-warsaw/GOpro |
| Bug Reports | https://github.com/mi2-warsaw/GOpro/issues |
See More
| Suggests | knitr, rmarkdown, RTCGA.PANCAN12, BiocStyle, testthat |
| Linking To | Rcpp, BH |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GOpro_1.12.0.tar.gz |
| Windows Binary | GOpro_1.12.0.zip |
| Mac OS X 10.11 (El Capitan) | GOpro_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GOpro |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GOpro |
| Bioc Package Browser | https://code.bioconductor.org/browse/GOpro/ |
| Package Short Url | https://bioconductor.org/packages/GOpro/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |