GMRP
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see GMRP.
GWAS-based Mendelian Randomization and Path Analyses
Bioconductor version: 3.10
Perform Mendelian randomization analysis of multiple SNPs to determine risk factors causing disease of study and to exclude confounding variabels and perform path analysis to construct path of risk factors to the disease.
Author: Yuan-De Tan
Maintainer: Yuan-De Tan <tanyuande at gmail.com>
citation("GMRP")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GMRP")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GMRP")| Causal Effect Analysis of Risk Factors for Disease with the "GMRP" package | R Script | |
| GMRP-manual.pdf | ||
| Reference Manual |
Details
| biocViews | Regression, SNP, Sequencing, Software |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.3.0), stats, utils, graphics, grDevices, diagram, plotrix, base, GenomicRanges |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GMRP_1.14.0.tar.gz |
| Windows Binary | GMRP_1.14.0.zip |
| Mac OS X 10.11 (El Capitan) | GMRP_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GMRP |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GMRP |
| Bioc Package Browser | https://code.bioconductor.org/browse/GMRP/ |
| Package Short Url | https://bioconductor.org/packages/GMRP/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |