GGBase
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GGBase.
GGBase infrastructure for genetics of gene expression package GGtools
Bioconductor version: 3.10
infrastructure
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("GGBase")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GGBase")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GGBase")| GGBase -- infrastructure for GGtools, genetics of gene expression | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Genetics, Infrastructure, Software |
| Version | 3.48.0 |
| In Bioconductor since | BioC 2.2 (R-2.7) (16 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.14), methods, snpStats |
| Imports | limma, genefilter, Biobase, BiocGenerics, S4Vectors, IRanges, Matrix, AnnotationDbi, digest, GenomicRanges, SummarizedExperiment |
| System Requirements | |
| URL |
See More
| Suggests | GGtools, illuminaHumanv1.db, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | ceu1kg, ceu1kgv, ceuhm3, dsQTL, GGdata, GGtools, hmyriB36, yri1kgv |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GGBase_3.48.0.tar.gz |
| Windows Binary | GGBase_3.48.0.zip |
| Mac OS X 10.11 (El Capitan) | GGBase_3.48.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GGBase |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GGBase |
| Bioc Package Browser | https://code.bioconductor.org/browse/GGBase/ |
| Package Short Url | https://bioconductor.org/packages/GGBase/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |