ExpressionView
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ExpressionView.
Visualize biclusters identified in gene expression data
Bioconductor version: 3.10
ExpressionView visualizes possibly overlapping biclusters in a gene expression matrix. It can use the result of the ISA method (eisa package) or the algorithms in the biclust package or others. The viewer itself was developed using Adobe Flex and runs in a flash-enabled web browser.
Author: Andreas Luscher <andreas.luescher at a3.epfl.ch>
Maintainer: Gabor Csardi <csardi.gabor at gmail.com>
citation("ExpressionView")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ExpressionView")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ExpressionView")| ExpressionView | R Script | |
| ExpressionView file format | ||
| How the ordering algorithm works | R Script | |
| Reference Manual |
Details
| biocViews | Classification, GO, GeneExpression, KEGG, Microarray, Software, Visualization |
| Version | 1.38.0 |
| In Bioconductor since | BioC 2.6 (R-2.11) (14 years) |
| License | GPL (>= 2) |
| Depends | caTools, bitops, methods, isa2, eisa, GO.db, KEGG.db, AnnotationDbi |
| Imports | methods, isa2, eisa, GO.db, KEGG.db, AnnotationDbi |
| System Requirements | |
| URL |
See More
| Suggests | ALL, hgu95av2.db, biclust, affy |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ExpressionView_1.38.0.tar.gz |
| Windows Binary | ExpressionView_1.38.0.zip |
| Mac OS X 10.11 (El Capitan) | ExpressionView_1.38.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ExpressionView |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ExpressionView |
| Bioc Package Browser | https://code.bioconductor.org/browse/ExpressionView/ |
| Package Short Url | https://bioconductor.org/packages/ExpressionView/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |