ClusterJudge
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see ClusterJudge.
Judging Quality of Clustering Methods using Mutual Information
Bioconductor version: 3.10
ClusterJudge implements the functions, examples and other software published as an algorithm by Gibbons, FD and Roth FP. The article is called "Judging the Quality of Gene Expression-Based Clustering Methods Using Gene Annotation" and it appeared in Genome Research, vol. 12, pp1574-1581 (2002). See package?ClusterJudge for an overview.
Author: Adrian Pasculescu
Maintainer: Adrian Pasculescu <pasculescu at lunenfeld.ca>
citation("ClusterJudge")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ClusterJudge")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ClusterJudge")| Vignette Title | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, GO, GeneExpression, Software, StatisticalMethod |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4), stats, utils, graphics, infotheo, lattice, latticeExtra, httr, jsonlite |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | yeastExpData, knitr, rmarkdown, devtools, testthat, biomaRt |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ClusterJudge_1.8.0.tar.gz |
| Windows Binary | ClusterJudge_1.8.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | ClusterJudge_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ClusterJudge |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ClusterJudge |
| Bioc Package Browser | https://code.bioconductor.org/browse/ClusterJudge/ |
| Package Short Url | https://bioconductor.org/packages/ClusterJudge/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |