ChIPsim
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see ChIPsim.
Simulation of ChIP-seq experiments
Bioconductor version: 3.10
A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.
Author: Peter Humburg
Maintainer: Peter Humburg <Peter.Humburg at gmail.com>
Citation (from within R, enter
citation("ChIPsim")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ChIPsim")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChIPsim")| Simulating ChIP-seq experiments | R Script | |
| Reference Manual |
Details
| biocViews | ChIPSeq, Infrastructure, Software |
| Version | 1.40.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) (14.5 years) |
| License | GPL (>= 2) |
| Depends | Biostrings(>= 2.29.2) |
| Imports | IRanges, XVector, Biostrings, ShortRead, graphics, methods, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | actuar, zoo |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ChIPsim_1.40.0.tar.gz |
| Windows Binary | ChIPsim_1.40.0.zip |
| Mac OS X 10.11 (El Capitan) | ChIPsim_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ChIPsim |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ChIPsim |
| Bioc Package Browser | https://code.bioconductor.org/browse/ChIPsim/ |
| Package Short Url | https://bioconductor.org/packages/ChIPsim/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |