ChIPseqR
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see ChIPseqR.
Identifying Protein Binding Sites in High-Throughput Sequencing Data
Bioconductor version: 3.10
ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.
Author: Peter Humburg
Maintainer: Peter Humburg <peter.humburg at gmail.com>
citation("ChIPseqR")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ChIPseqR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChIPseqR")| Introduction to ChIPseqR | R Script | |
| Reference Manual |
Details
| biocViews | ChIPSeq, Infrastructure, Software |
| Version | 1.40.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) (14.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10.0), methods, BiocGenerics, S4Vectors(>= 0.9.25) |
| Imports | Biostrings, fBasics, GenomicRanges, IRanges(>= 2.5.14), graphics, grDevices, HilbertVis, ShortRead, stats, timsac, utils |
| System Requirements | |
| URL |
See More
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| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
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| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ChIPseqR_1.40.0.tar.gz |
| Windows Binary | ChIPseqR_1.40.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | ChIPseqR_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ChIPseqR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ChIPseqR |
| Bioc Package Browser | https://code.bioconductor.org/browse/ChIPseqR/ |
| Package Short Url | https://bioconductor.org/packages/ChIPseqR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |