CHARGE

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CHARGE.

CHARGE: CHromosome Assessment in R from Gene Expression data

Bioconductor version: 3.10

Identifies genomic duplications or deletions from gene expression data.

Author: Benjamin Mayne

Maintainer: Benjamin Mayne <benjamin.mayne at sahmri.com>

Citation (from within R, enter citation("CHARGE")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CHARGE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CHARGE")

CHARGE_Example	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Clustering, GeneExpression, Software
Version	1.6.0
In Bioconductor since	BioC 3.7 (R-3.5) (6 years)
License	GPL-2
Depends	R (>= 3.5), GenomicRanges, methods
Imports	SummarizedExperiment, FactoMineR, factoextra, IRanges, graphics, modes, parallel, plyr, cluster, diptest, stats, matrixStats
System Requirements
URL

Suggests	roxygen2, EnsDb.Hsapiens.v86
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CHARGE_1.6.0.tar.gz
Windows Binary	CHARGE_1.6.0.zip
Mac OS X 10.11 (El Capitan)	CHARGE_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CHARGE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CHARGE
Bioc Package Browser	https://code.bioconductor.org/browse/CHARGE/
Package Short Url	https://bioconductor.org/packages/CHARGE/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.10	Source Archive