BiocSklearn
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see BiocSklearn.
interface to python sklearn via Rstudio reticulate
Bioconductor version: 3.10
This package provides interfaces to selected sklearn elements, and demonstrates fault tolerant use of python modules requiring extensive iteration.
Author: Vince Carey
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("BiocSklearn")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BiocSklearn")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiocSklearn")| BiocSklearn overview | HTML | R Script |
| Reference Manual |
Details
| biocViews | DimensionReduction, Infrastructure, Software, StatisticalMethod |
| Version | 1.8.1 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0), reticulate, methods, SummarizedExperiment, knitr |
| Imports | BBmisc |
| System Requirements | python (>= 2.7), sklearn, numpy, pandas, h5py |
| URL |
See More
| Suggests | testthat, restfulSE, HDF5Array, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BiocSklearn_1.8.1.tar.gz |
| Windows Binary | BiocSklearn_1.7.0.zip |
| Mac OS X 10.11 (El Capitan) | BiocSklearn_1.8.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BiocSklearn |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BiocSklearn |
| Bioc Package Browser | https://code.bioconductor.org/browse/BiocSklearn/ |
| Package Short Url | https://bioconductor.org/packages/BiocSklearn/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |