BayesPeak
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see BayesPeak.
Bayesian Analysis of ChIP-seq Data
Bioconductor version: 3.10
This package is an implementation of the BayesPeak algorithm for peak-calling in ChIP-seq data.
Author: Christiana Spyrou, Jonathan Cairns, Rory Stark, Andy Lynch, Simon Tavar\\'{e},
Maintainer: Jonathan Cairns <jonathan.cairns at babraham.ac.uk>
citation("BayesPeak")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BayesPeak")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BayesPeak")| BayesPeak Vignette | R Script | |
| Reference Manual |
Details
| biocViews | ChIPSeq, Software |
| Version | 1.38.0 |
| In Bioconductor since | BioC 2.6 (R-2.11) (14 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.14), IRanges |
| Imports | IRanges, graphics |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, parallel |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BayesPeak_1.38.0.tar.gz |
| Windows Binary | BayesPeak_1.38.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | BayesPeak_1.38.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BayesPeak |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BayesPeak |
| Bioc Package Browser | https://code.bioconductor.org/browse/BayesPeak/ |
| Package Short Url | https://bioconductor.org/packages/BayesPeak/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |