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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("FunciSNP.data")
In most cases, you don't need to download the package archive at all.
FunciSNP.data
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see FunciSNP.data.
Various data sets for use with the FunciSNP package
Bioconductor version: 3.1
Data sets needed for FunciSNP to integrate information from GWAS, 1000genomes and chromatin feature, in order to identify functional SNP in coding or non-coding regions.
Author: Simon G. Coetzee <simon at simoncoetzee.com> and Houtan Noushmehr, PhD <houtan at usp.br>
Maintainer: Simon G. Coetzee <scoetzee at gmail.com>
Citation (from within R,
enter citation("FunciSNP.data")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("FunciSNP.data")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FunciSNP.data")
| R Script | FunciSNP Vignette | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | ENCODE, ExperimentData, Project1000genomes, SNPData |
| Version | 1.4.0 |
| License | GPL-3 |
| Depends | R (>= 2.14.0), IRanges |
| Imports | rtracklayer |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://coetzeeseq.usc.edu/publication/Coetzee_SG_et_al_2012/ |
| Depends On Me | FunciSNP |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | FunciSNP.data_1.4.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/FunciSNP.data/ |
| Package Downloads Report | Download Stats |
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