To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("yaqcaffy")

In most cases, you don't need to download the package archive at all.

yaqcaffy

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see yaqcaffy.

Affymetrix expression data quality control and reproducibility analysis

Bioconductor version: 3.1

Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at gmail.com>

Citation (from within R, enter citation("yaqcaffy")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("yaqcaffy")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("yaqcaffy")

PDF	R Script	yaqcaffy: Affymetrix quality control and MAQC reproducibility
PDF		Reference Manual
Text		NEWS

biocViews	Microarray, OneChannel, QualityControl, ReportWriting, Software
Version	1.28.0
In Bioconductor since	BioC 2.2 (R-2.7) (8 years)
License	Artistic-2.0
Depends	simpleaffy(>= 2.19.3), methods
Imports	stats4
LinkingTo
Suggests	MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	qcmetrics
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	yaqcaffy_1.28.0.tar.gz
Windows Binary	yaqcaffy_1.28.0.zip
Mac OS X 10.6 (Snow Leopard)	yaqcaffy_1.28.0.tgz
Mac OS X 10.9 (Mavericks)	yaqcaffy_1.28.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/yaqcaffy/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/yaqcaffy/
Package Downloads Report	Download Stats

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