To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("lpNet")
In most cases, you don't need to download the package archive at all.
lpNet
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see lpNet.
Linear Programming Model for Network Inference
Bioconductor version: 3.1
lpNet aims at infering biological networks, in particular signaling and gene networks. For that it takes perturbation data, either steady-state or time-series, as input and generates an LP model which allows the inference of signaling networks. For parameter identification either leave-one-out cross-validation or stratified n-fold cross-validation can be used.
Author: Bettina Knapp, Marta R. A. Matos, Johanna Mazur, Lars Kaderali
Maintainer: Bettina Knapp <bettina.knapp at tu-dresden.de>
Citation (from within R,
enter citation("lpNet")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("lpNet")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("lpNet")
| R Script | lpNet, network inference with a linear optimization program. | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | NetworkInference, Software |
| Version | 2.0.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (3 years) |
| License | Artistic License 2.0 |
| Depends | lpSolve, nem |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | lpNet_2.0.0.tar.gz |
| Windows Binary | lpNet_2.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | lpNet_2.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | lpNet_2.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/lpNet/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/lpNet/ |
| Package Downloads Report | Download Stats |
Documentation »
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