To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gwascat")

In most cases, you don't need to download the package archive at all.

gwascat

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see gwascat.

representing and modeling data in the NHGRI GWAS catalog

Bioconductor version: 3.1

representing and modeling data in the NHGRI GWAS catalog

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("gwascat")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gwascat")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gwascat")

PDF	R Script	gwascat -- exploring NHGRI GWAS catalog
PDF		Reference Manual
Text		NEWS

biocViews	Genetics, Software
Version	1.12.0
In Bioconductor since	BioC 2.10 (R-2.15) (4 years)
License	Artistic-2.0
Depends	R (>= 3.0.0)
Imports	methods, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, snpStats, Biostrings, Rsamtools, rtracklayer, gQTLstats, Gviz, VariantAnnotation
LinkingTo
Suggests	DO.db, ggbio, graph
SystemRequirements
Enhances	SNPlocs.Hsapiens.dbSNP.20120608
URL
Depends On Me	vtpnet
Imports Me
Suggests Me	grasp2db
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	gwascat_1.12.0.tar.gz
Windows Binary	gwascat_1.12.0.zip
Mac OS X 10.6 (Snow Leopard)	gwascat_1.12.0.tgz
Mac OS X 10.9 (Mavericks)	gwascat_1.12.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/gwascat/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/gwascat/
Package Downloads Report	Download Stats

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