genomation

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see genomation.

Summary, annotation and visualization of genomic data

Bioconductor version: 3.1

A package for summary and annotation of genomic intervals. Users can visualize and quantify genomic intervals over pre-defined functional regions, such as promoters, exons, introns, etc. The genomic intervals represent regions with a defined chromosome position, which may be associated with a score, such as aligned reads from HT-seq experiments, TF binding sites, methylation scores, etc. The package can use any tabular genomic feature data as long as it has minimal information on the locations of genomic intervals. In addition, It can use BAM or BigWig files as input.

Author: Altuna Akalin, Vedran Franke

Maintainer: Altuna Akalin <aakalin at gmail.com>, Vedran Franke <vedran.franke at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genomation")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genomation")

Details

Package Archives

Follow Installation instructions to use this package in your R session.