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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("conumee")
In most cases, you don't need to download the package archive at all.
conumee
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see conumee.
Enhanced copy-number variation analysis using Illumina 450k methylation arrays
Bioconductor version: 3.1
This package contains a set of processing and plotting methods for performing copy-number variation (CNV) analysis using Illumina 450k methylation arrays.
Author: Volker Hovestadt, Marc Zapatka
Maintainer: Volker Hovestadt <conumee at hovestadt.bio>
Citation (from within R,
enter citation("conumee")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("conumee")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("conumee")
| HTML | R Script | The conumee vignette |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | CopyNumberVariation, DNAMethylation, MethylationArray, Microarray, Normalization, Preprocessing, QualityControl, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (1 year) |
| License | GPL (>= 2) |
| Depends | R (>= 3.0), minfi, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19 |
| Imports | methods, stats, DNAcopy, rtracklayer, GenomicRanges, IRanges, GenomeInfoDb |
| LinkingTo | |
| Suggests | BiocStyle, knitr, rmarkdown, minfiData, CopyNumber450kData, RCurl |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | conumee_1.0.0.tar.gz |
| Windows Binary | conumee_1.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | conumee_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | conumee_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/conumee/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/conumee/ |
| Package Downloads Report | Download Stats |
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