To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TFBSTools")

In most cases, you don't need to download the package archive at all.

TFBSTools

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see TFBSTools.

Software package for transcription factor binding site (TFBS) analysis

Bioconductor version: 3.1

TFBSTools is a package for the analysis and manipulation of transcription factor binding sites and transcription factor profile matrices.

Author: Ge Tan <ge.tan09 at imperial.ac.uk>

Maintainer: Ge Tan <ge.tan09 at imperial.ac.uk>

Citation (from within R, enter citation("TFBSTools")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TFBSTools")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TFBSTools")

PDF	R Script	transcription factor binding site (TFBS) analysis with the "TFBSTools" package
PDF		Reference Manual
Text		NEWS

biocViews	GeneRegulation, MotifAnnotation, MotifDiscovery, Software
Version	1.6.1
In Bioconductor since	BioC 2.13 (R-3.0) (2.5 years)
License	GPL-2
Depends	R (>= 3.0.1)
Imports	Biostrings(>= 2.33.3), RSQLite (>= 0.11.4), seqLogo, GenomicRanges(>= 1.17.7), caTools (>= 1.14), XVector(>= 0.5.8), rtracklayer(>= 1.25.3), BSgenome(>= 1.30.0), S4Vectors(>= 0.2.3), IRanges(>= 1.99.28), methods, gtools (>= 3.0.0), CNEr(>= 0.99.8), BiocParallel(>= 0.5.6), DirichletMultinomial(>= 1.7.1), TFMPvalue (>= 0.0.5), BiocGenerics
LinkingTo
Suggests	JASPAR2014(>= 0.99.3), RUnit, BiocStyle, knitr
SystemRequirements	meme
Enhances
URL	http://jaspar.genereg.net/
Depends On Me
Imports Me	MatrixRider
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	TFBSTools_1.6.1.tar.gz
Windows Binary	TFBSTools_1.6.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	TFBSTools_1.6.1.tgz
Mac OS X 10.9 (Mavericks)	TFBSTools_1.6.1.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/TFBSTools/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/TFBSTools/
Package Downloads Report	Download Stats

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