Package: nlcv Version: 0.2-0 Depends: methods, graphics, Biobase, MLInterfaces (>= 1.22.0), multtest, RColorBrewer, xtable, ipred, pamr, limma, randomForest, ROCR, a4Core License: GPL-3 MD5sum: dd5897278eef1b9cd7fe9e6ccd6da878 NeedsCompilation: no Title: Nested Loop Cross Validation Description: Nested loop cross validation for classification purposes Author: Willem Talloen, Tobias Verbeke Maintainer: Tobias Verbeke source.ver: src/contrib/nlcv_0.2-0.tar.gz win.binary.ver: bin/windows/contrib/3.1/nlcv_0.2-0.zip win64.binary.ver: bin/windows64/contrib/3.1/nlcv_0.2-0.zip mac.binary.ver: bin/macosx/contrib/3.1/nlcv_0.2-0.tgz mac.binary.mavericks.ver: bin/macosx/mavericks/contrib/3.1/nlcv_0.2-0.tgz vignettes: vignettes/nlcv/inst/doc/nlcv.pdf vignetteTitles: nlcv.pdf hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Package: org.TguttataTestingSubset.eg.db Version: 0.1 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.23.27) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: 957070767053bbf13147784feb2b8918 NeedsCompilation: no Title: Genome wide annotation for Taeniopygia guttataTestingSubset Description: Genome wide annotation for Taeniopygia guttataTestingSubset, primarily based on mapping using Entrez Gene identifiers. biocViews: OrgDb, annotation Author: Some One Maintainer: Some One organism: Taeniopygia guttataTestingSubset source.ver: src/contrib/org.TguttataTestingSubset.eg.db_0.1.tar.gz win.binary.ver: bin/windows/contrib/3.1/org.TguttataTestingSubset.eg.db_0.1.zip win64.binary.ver: bin/windows64/contrib/3.1/org.TguttataTestingSubset.eg.db_0.1.zip mac.binary.ver: bin/macosx/contrib/3.1/org.TguttataTestingSubset.eg.db_0.1.tgz mac.binary.mavericks.ver: bin/macosx/mavericks/contrib/3.1/org.TguttataTestingSubset.eg.db_0.1.tgz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Package: RCurl Version: 1.95-0.1.2 Depends: R (>= 2.7.0), methods, bitops Imports: methods Suggests: Rcompression, XML License: BSD Archs: i386, x64 MD5sum: 6bdefe69687a3a3a76f95dcb5938e955 NeedsCompilation: yes Title: General network (HTTP/FTP/...) client interface for R Description: The package allows one to compose general HTTP requests and provides convenient functions to fetch URIs, get & post forms, etc. and process the results returned by the Web server. This provides a great deal of control over the HTTP/FTP/... connection and the form of the request while providing a higher-level interface than is available just using R socket connections. Additionally, the underlying implementation is robust and extensive, supporting FTP/FTPS/TFTP (uploads and downloads), SSL/HTTPS, telnet, dict, ldap, and also supports cookies, redirects, authentication, etc. Author: Duncan Temple Lang Maintainer: Duncan Temple Lang URL: http://www.omegahat.org/RCurl SystemRequirements: libcurl (version 7.14.0 or higher) http://curl.haxx.se. On Linux systems, you will often have to explicitly install libcurl-devel to have the header files and the libcurl library. source.ver: src/contrib/RCurl_1.95-0.1.2.tar.gz win.binary.ver: bin/windows/contrib/3.1/RCurl_1.95-0.1.2.zip win64.binary.ver: bin/windows64/contrib/3.1/RCurl_1.95-0.1.2.zip hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: SSOAP, XMLRPC, XMLSchema suggestsMe: XMLSchema Package: Rlibstree Version: 0.3-2 Depends: methods License: BSD MD5sum: c8ab81c31a4f422cc6a357a90b891fa4 NeedsCompilation: yes Title: Suffix Trees in R via the libstree Clibrary Description: Facilities for using suffix trees in C to do computations on large collections strings. This currently uses Christian Kreibich's libstree library to implement the Suffix Trees. Author: Duncan Temple Lang Maintainer: Duncan Temple Lang source.ver: src/contrib/Rlibstree_0.3-2.tar.gz win.binary.ver: bin/windows/contrib/3.1/Rlibstree_0.3-2.zip win64.binary.ver: bin/windows64/contrib/3.1/Rlibstree_0.3-2.zip mac.binary.ver: bin/macosx/contrib/3.1/Rlibstree_0.3-2.tgz mac.binary.mavericks.ver: bin/macosx/mavericks/contrib/3.1/Rlibstree_0.3-2.tgz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Package: SNPRelate Version: 0.9.19 Depends: R (>= 2.10), gdsfmt (>= 0.9.12) Suggests: lattice, RUnit License: GPL-3 Archs: i386, x64 MD5sum: 5b292df5e6567466add8fcf90391eae4 NeedsCompilation: yes Title: Parallel Computing Toolset for Genome-Wide Association Studies (GWAS) Description: A High-performance computing toolset for relatedness and principal component analysis of SNP data Author: Xiuwen Zheng Maintainer: Xiuwen Zheng URL: http://corearray.sourceforge.net/ source.ver: src/contrib/SNPRelate_0.9.19.tar.gz win.binary.ver: bin/windows/contrib/3.1/SNPRelate_0.9.19.zip win64.binary.ver: bin/windows64/contrib/3.1/SNPRelate_0.9.19.zip mac.binary.ver: bin/macosx/contrib/3.1/SNPRelate_0.9.19.tgz mac.binary.mavericks.ver: bin/macosx/mavericks/contrib/3.1/SNPRelate_0.9.19.tgz vignettes: vignettes/SNPRelate/inst/doc/SNPRelateTutorial.pdf vignetteTitles: SNPRelateTutorial.pdf hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Package: SSOAP Version: 0.8-0 Depends: R (>= 1.5.0), methods Imports: XML, RCurl, XMLSchema License: GPL2 MD5sum: f20419af729e7be14fb5a360d8b27bc7 NeedsCompilation: no Title: Client-side SOAP access for S Description: A package that provides a client interface to SOAP (Simple Object Access Protocol) servers from within R. Author: Duncan Temple Lang Maintainer: Duncan Temple Lang URL: http://www.omegahat.org/SSOAP, http://www.omegahat.org http://www.omegahat.org/bugs source.ver: src/contrib/SSOAP_0.8-0.tar.gz win.binary.ver: bin/windows/contrib/3.1/SSOAP_0.8-0.zip win64.binary.ver: bin/windows64/contrib/3.1/SSOAP_0.8-0.zip mac.binary.ver: bin/macosx/contrib/3.1/SSOAP_0.9-0.tgz mac.binary.mavericks.ver: bin/macosx/mavericks/contrib/3.1/SSOAP_0.9-0.tgz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Package: SVGAnnotation Version: 0.93-1 Depends: grDevices, methods, XML Suggests: RJSONIO License: BSD MD5sum: d730b05b7ca7105bca9308e4770bc09c NeedsCompilation: no Title: Tools for post-processing SVG plots created in R Description: This package is an example of how we can post-process SVG files generated with R graphics, at present just those generated via the svg() function within R itself using the cairo library. (Support for RSVGDevice may be added in the future.) The idea is that we can add "effects" to the SVG components such as putting tooltips on the elements (points, bars, etc.) in the plot, animating points over "time" within one or more plots, changing colors of symbols within plots for simple linking. The package provides high-level facilities for annotating the plots, and also low-level facilities for finding plot regions, lattice panels and strips, determining coordinates of regions and so on. Others can use these to provide additional annotation functionality. This also provides facilities for adding a reference to a CSS file so that the appearance of certain types of elements can be controlled externally, e.g. links. This package contains JavaScript code for inteactive GUI components rendered via SVG. This is code written by Andreas Neumann and Andreas Winter and obtained from http://www.carto.net/papers/svg/gui. This differs from Tony Plate's RSVGTipsDevice as a) it uses the SVG device within R based on libcairo, and b) it does not use global variables and require tooltips and hyperrefs to be specified one at a time and before drawing each individual shape. Instead, this approach allows us deal with all elements of an R plot and add SVG features to each of them. This package was put together as a proof of concept and example of how to go about doing this sort of post-processing to enhance R plots to make them interactive and dynamic/animated. More can be done and what has been done can be done better. Others are encouraged to submit enhancements, changes, etc. Author: Duncan Temple Lang, Deborah Nolan Maintainer: Duncan Temple Lang source.ver: src/contrib/SVGAnnotation_0.93-1.tar.gz win.binary.ver: bin/windows/contrib/3.1/SVGAnnotation_0.93-1.zip win64.binary.ver: bin/windows64/contrib/3.1/SVGAnnotation_0.93-1.zip mac.binary.ver: bin/macosx/contrib/3.1/SVGAnnotation_0.93-1.tgz mac.binary.mavericks.ver: bin/macosx/mavericks/contrib/3.1/SVGAnnotation_0.93-1.tgz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Package: XMLRPC Version: 0.3-0 Imports: methods, RCurl, XML License: BSD MD5sum: c10b6644534ca9e0c8aa097b916478b0 NeedsCompilation: no Title: Remote Procedure Call (RPC) via XML in R Description: A simple implementation of XML-RPC for R. Author: Duncan Temple Lang Maintainer: Duncan Temple Lang source.ver: src/contrib/XMLRPC_0.3-0.tar.gz win.binary.ver: bin/windows/contrib/3.1/XMLRPC_0.3-0.zip win64.binary.ver: bin/windows64/contrib/3.1/XMLRPC_0.3-0.zip mac.binary.ver: bin/macosx/contrib/3.1/XMLRPC_0.3-0.tgz mac.binary.mavericks.ver: bin/macosx/mavericks/contrib/3.1/XMLRPC_0.3-0.tgz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Package: XMLSchema Version: 0.7-2 Depends: R (>= 1.5.0), methods, XML Imports: RCurl, codetools Suggests: RCurl License: GPL2 MD5sum: c68a8c638c0f338d87629fd30e2a904b NeedsCompilation: no Title: R facilities to read XML schema Description: A package that reads XML schema into an R representation and can perform some operations on the resulting information to generate class definitions and code to read documents using this schema. This is code that was originally in the SSOAP package for reading WSDL files that describe Web Services and use XML schema. Author: Duncan Temple Lang Maintainer: Duncan Temple Lang URL: http://www.omegahat.org/XMLSchema, http://www.omegahat.org http://www.omegahat.org/bugs source.ver: src/contrib/XMLSchema_0.7-2.tar.gz win.binary.ver: bin/windows/contrib/3.1/XMLSchema_0.7-2.zip win64.binary.ver: bin/windows64/contrib/3.1/XMLSchema_0.7-2.zip mac.binary.ver: bin/macosx/contrib/3.1/XMLSchema_0.7-0.tgz mac.binary.mavericks.ver: bin/macosx/mavericks/contrib/3.1/XMLSchema_0.7-0.tgz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE